Skip to content
← All articles

Media fill (aseptic process simulation): planning, running and investigating

13 min read · 18 October 2026

Laminar airflow cabinet with HEPA filter, airflow and aseptic work in progressISO 5 · HEPA H140.45 m/s

A media fill, or aseptic process simulation (APS), replaces the product with a sterile growth medium and runs it through the aseptic process exactly as a real batch would be run. If the process can introduce contamination, the medium will show it.

The APS is the main evidence that an aseptic process works. Sterility tests on batches have very limited power to detect low-level contamination; a media fill of thousands of units, run under worst-case conditions, is far more sensitive. That is why regulators treat a failed APS so seriously.

What it must simulate

EU GMP Annex 1 (2022) expects the APS to imitate routine production as closely as possible, including the worst cases. Plan to include:

  • All aseptic steps from the point where sterile materials are first exposed, through filling and sealing
  • The maximum number of interventions, both inherent ones (such as loading stoppers) and corrective ones (such as clearing a jammed vial)
  • The longest permitted duration of the process, or a justified representative duration
  • The maximum number of people allowed in the room, and every operator who works in aseptic processing
  • Shift changes, breaks and line clearances if they happen in routine production
  • Worst-case container sizes and line speeds, with a justification
  • Holding times for sterile equipment and components, at their maximum validated values

For lyophilised products, the simulation should cover transfer and loading of the lyophiliser, with the chamber held under conditions that mimic the cycle, but without freezing the medium.

Planning the run

Write a protocol that a reviewer could use to check the run was representative. Include:

  1. Process description and the scope of the simulation
  2. Risk assessment of interventions, with a list of every intervention to be simulated and how often
  3. Container and closure sizes, and the rationale for any bracketing
  4. Number of units and duration
  5. Medium, its preparation, sterilisation and growth promotion
  6. Personnel list, with each person's role
  7. Incubation conditions and inspection method
  8. Acceptance criteria and actions on failure

How many units?

The number of units should be large enough to simulate all routine activities and give meaningful confidence. Annex 1 does not set a single number, but for small batches (fewer than about 5,000 units), the APS should be at least as large as the production batch. Most sites fill 5,000–10,000 units for typical vial lines, or the full batch size for small batches.

Choosing the medium

Soybean-casein digest medium is the usual choice because it supports a wide range of bacteria and fungi. For processes that are anaerobic, for example under nitrogen overlay, fluid thioglycollate medium or an anaerobic simulation may be needed. The medium should be clear enough to see turbidity, filterable through the same filters as the product if filtration is simulated, and sterilised by a validated method.

Interventions

Aseptic filling line running a media fill, with incubated vials and one turbid unitSCDM FILL!14 days · 20–25 → 30–35 °C
Every intervention allowed in production must be simulated.

Interventions are where contamination happens. Classify them:

  • Inherent interventions are part of every batch: loading stoppers, changing containers, environmental sampling, weight checks.
  • Corrective interventions fix problems: clearing a jam, replacing a broken part, removing a fallen vial.

Every corrective intervention that is allowed in routine production should be included in the APS, at least as often as it realistically happens. If a corrective intervention was not simulated, it should not be allowed in production. Keep an intervention list that matches between the APS protocol, the batch record and the training records.

How often

Gowning airlock with a sterile coverall, hood, goggles, boots and a step-over benchSTEP-OVER · GRADE C → GRADE B
Every Grade A operator takes part in a successful media fill each year.
  • Initial validation: three consecutive successful runs per shift for a new process or line.
  • Periodic revalidation: twice a year (about every six months) for each aseptic process, filling line and shift.
  • After significant changes to the process, equipment, facility or after a failed APS.
  • Each operator working in Grade A should take part in at least one successful APS every year.

Incubation and inspection

Filled units are incubated for 14 days. When two temperatures are used, a common approach is 20–25 °C for at least 7 days followed by 30–35 °C for at least 7 days; the conditions must be justified for the organisms you expect. Before incubation, invert or swirl the units so that the medium contacts all internal surfaces, including the stopper.

Every integral unit is inspected by trained people under good lighting, and units with a container-closure defect are documented and excluded only with justification. Inspectors should be qualified with a set of known positive units. If the medium is in amber or opaque containers, plan how growth will be seen, for example by transferring to clear containers or by sampling.

Run a growth promotion test on the medium in its final container after incubation, to prove it could have supported growth. Use compendial organisms and a few of your own environmental isolates.

Reconciliation

Account for every unit: filled, rejected during filling (with reasons), removed for environmental or weight checks, incubated and inspected. Unexplained differences between filled and inspected units are a serious finding, because a missing unit could be a positive one.

Investigating a contaminated unit

  1. Identify the organism to species level, ideally with a genotypic method.
  2. Compare it with the EM and personnel monitoring organism library from the same period.
  3. Review the intervention records and video of the run.
  4. Check the container closure of the positive unit, and test its integrity.
  5. Review sterilisation records for the medium, equipment, components and filters.
  6. Assess every batch filled since the last successful APS.
  7. Define the root cause and CAPA, then repeat the APS.

An organism that matches a skin isolate from a specific operator, together with a video showing a poor intervention, points one way. A spore-former matching an isolate from material transfer points another. Do not close the investigation until the evidence is clear, or until all plausible causes have been addressed.

Common audit findings

  • Interventions in the APS do not match the interventions recorded in routine batches
  • Operators who work in aseptic areas have not taken part in a media fill
  • Units removed from the count without a documented reason
  • Incubation temperatures not justified
  • APS duration shorter than routine production without justification
  • Inspectors not qualified, or inspection lighting not controlled
  • Growth promotion of the medium not performed after incubation

A well-designed media fill is an honest rehearsal of the worst day on the line. If it passes under those conditions, you have real evidence that your aseptic process is under control.

Educational content. Always follow your site's approved SOPs, the current pharmacopoeia and applicable regulations.